rs28114927 SNP Detail

Summary

• ID
  rs28114927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95785204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCAGTGA GCCAGGCTTT
  CCCGGAATGC TGCAGGCTGC TTCAAAGGCC CATTGTGGAA AGCTTCCAGA TGTGTATGGA
  AAACCTCACT GGGAGCTTCC CAGTGAAGAG ACTTCTTAGG CCTGAGCCAA GCTGAAGGAA
  GTAGATGTGA CACATCCCTA CCAGGTGGGC TGTATTCTGA AGGAGTCCAG ATTCTACCTT
  R
  AAGGAGAGAC CAAGGACAGT TACCCAGTCC AGATGCCAGA GCCAAGCAGT GTGTCCTCTT
  TGGTTACAGA CAGCAATGGG GTTTGCTGGA GTGAGACAGA AAGGCATTCT CCCACGCAGG
  AATCTTCCTG AAAATTGCTC ATGACAGTTT CTTTGCTCCT CCAGCATATC ATGTACAGGA
  GGGATTTCAG GTTGGAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253256	NES09551564	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G	A		G	A	G	G		G
ss321216049	CHEV_4_95563658	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28114927					SNP	A	G	A	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253256	NES09551564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95785204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			1428 bp distal
Rr595486	regulatory region 595486			within coordinates
Rr595487	regulatory region 595487			341 bp proximal
Rr595488	regulatory region 595488			364 bp proximal
Rr595489	regulatory region 595489			497 bp proximal