rs28114924 SNP Detail

Summary

• ID
  rs28114924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95785319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCTGA GCCAAGCTGA
  AGGAAGTAGA TGTGACACAT CCCTACCAGG TGGGCTGTAT TCTGAAGGAG TCCAGATTCT
  ACCTTGAAGG AGAGACCAAG GACAGTTACC CAGTCCAGAT GCCAGAGCCA AGCAGTGTGT
  CCTCTTTGGT TACAGACAGC AATGGGGTTT GCTGGAGTGA GACAGAAAGG CATTCTCCCA
  Y
  GCAGGAATCT TCCTGAAAAT TGCTCATGAC AGTTTCTTTG CTCCTCCAGC ATATCATGTA
  CAGGAGGGAT TTCAGGTTGG AAAAATGGCC AACCATAGAA CAGCTATAGA GTCTATCCCT
  ACATGATTCC TTTAAGGATA TAAAAGGCTT GATGTCCTAT TTCTCCTCTT ATTAGACAGG
  GGAAGTGAGA GAGACCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38253253	NES09551567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28114924					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253253	NES09551567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95785319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			1543 bp distal
Rr595486	regulatory region 595486			43 bp distal
Rr595487	regulatory region 595487			226 bp proximal
Rr595488	regulatory region 595488			249 bp proximal
Rr595489	regulatory region 595489			382 bp proximal