rs28114917 SNP Detail

Summary

• ID
  rs28114917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95785887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCACTC CAGTTGTTCA
  GAGAGGTGGC GCTGGTCCCA TTTAGCCTTT AAATTTTACT TCTGTGGCTC TTTAAATCCT
  CTCCCTGTGT GTGCATATGC ACTTAGCTAA GTATTTCGAG ATCAGTGTAT TTCGGGGAAA
  GTCCTCTTGT CTCCAGCTAA AATTAGGCCT CTCTTGCTCC TCTATTCGCC TGCCCCCATC
  Y
  GATTTTACCT AATTAAAAGC ATTGACACTC AGCAAAGCTT GTGAGAGAAT TTGGGTGAAC
  AGCTGGGAGT TGCTCTCCAT GCCAACAGCT GCTGCCTCTC AGCAGGCAGG CAACAAGGAG
  TCTGGAGCCC TGTGGGGAGG ACAGGGAGGG AGCCTTGAAG ACAGATGAAA AAATTTGGCC
  ACAGGGAAAC CATCTGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253246	NES09551461	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		T	T	T	C		T	C	T	T		C
ss45653117	mCV22849253	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss147068349	ENSMUSSNP3586054	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss321216052	CHEV_4_95564341	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28114917					SNP	C	C	T	C	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253246	NES09551461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95785887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			1575 bp upstream
Rr595486	regulatory region 595486			611 bp distal
Rr595487	regulatory region 595487			321 bp distal
Rr595488	regulatory region 595488			within coordinates
Rr595489	regulatory region 595489			165 bp distal