rs28114915 SNP Detail

Summary

• ID
  rs28114915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95786167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAACAGC TGCTGCCTCT
  CAGCAGGCAG GCAACAAGGA GTCTGGAGCC CTGTGGGGAG GACAGGGAGG GAGCCTTGAA
  GACAGATGAA AAAATTTGGC CACAGGGAAA CCATCTGAGC AGGATGCACC CTGCATCACC
  ATGCCTTCTG CCTAATGAAA TAACTAATGG GAAAGAGGGC AAGCAGGAGA GGAAGGCATA
  R
  AGTCTAGCTA GCTCACTGGC AAACCACTGT CACCCATGCC CAGATTACAG TATTCACCCT
  GCCAAAGTGG AGAAGCCATG GGTTGGTACA AGGCATATCT TTTAAAACAG CCTCATTCAG
  TTTCTCCCAT GGATTTTAGG ATAAGTACCA AGTTCATCCA GAGCTCCCAG GTGTATCCTG
  CCTCACACCT GGTTGTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253244	NES09551463	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G	A		G	A	G	G		G
ss321216055	CHEV_4_95564621	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28114915					SNP	A	G	A	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253244	NES09551463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95786167 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			1295 bp upstream
Rr595486	regulatory region 595486			891 bp distal
Rr595487	regulatory region 595487			601 bp distal
Rr595488	regulatory region 595488			within coordinates
Rr595489	regulatory region 595489			445 bp distal