rs28114912 SNP Detail

Summary

• ID
  rs28114912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95787136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATCTTG TTCTCACTGT
  TGTCCACTGA ACAGCGGGAG AAGCTGAAGC TCTCATTCCT GGTCATCCCC CTTGCCCCCC
  CCGCCCCCCC CCCCCGTGTT CCTGCAAGGA GAAGGCAGCT CTGTGCAAAT AGTCTCTAGA
  TTCTCAGGGC CCAGGAGCAG CCCCTTGGGG GTAGAGGAAT TCCATTACTC CACCTGGTGT
  Y
  GCTTGCTCTC CTCTGGAGCC GGAAAGGGCC TCAGGAGACA GCTGTGGGGT CACCTCGGCT
  GTACTGTTCA GATCCTCAGT GCTCTTCCTA AGTAGTTCAT GAACCCAAGA CCAGAAACCT
  CAGAGGGAGT CCATTATCTC TGATGGCTTC TGTCTCTTTC TGATCTCTGC TTTTGATCTA
  TCACCAGAGC CTATGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253241	NES09551466	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	C	C	T		C	T	C	C		C
ss45580193	mCV22849261	ABI	CRAMUS_MOUSE	f	SNP		T							C
ss321216058	CHEV_4_95565590	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28114912					SNP	T	T	C	T	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253241	NES09551466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95787136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			326 bp upstream
Rr595486	regulatory region 595486			1860 bp distal
Rr595487	regulatory region 595487			1570 bp distal
Rr595488	regulatory region 595488			921 bp distal
Rr595489	regulatory region 595489			1414 bp distal
Rr595490	regulatory region 595490			1511 bp proximal