rs28114720 SNP Detail

Summary

• ID
  rs28114720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95812678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTGAGA ACTTGAAATG
  CTTACTAAAA TGACAGTCTA GACTCATTTT ATTGTCTCCA AATGGAATCA GGCTATTAAA
  GACCCTGCAT GTGAAGCCCT CTCTGACTGC CTAGCTCAGA GGAGCAGCAT GGGTATAGGA
  AACTCAACCC AGCAACAGAG ATGCCCCTCC CAGTGAATGG AGAAGCTGTG GAGGGTGTCC
  R
  CTAGAGGGTG CCTGAACTAT GCCGTTTGTT TGAAAGGAGA AGCAGTTTAT TCCCCTTCAT
  CTCTTTTGTG ACCTTCTCAA GACTTTTCAG GGAAGTGTTT TTAAGTTCAT TCTCAGAAAA
  AAAAAAAATC CATGTGCTTT CTCCCCCACC CCCCTGCCAG GGGTAATTAT TATTTTTTAA
  TTTAAATTAT AGATTTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38253048	NES09550199	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	A	A	G	G	G	A	G	A
ss147068521	ENSMUSSNP17108	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28114720					SNP	A	G	G	G	A	G	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253048	NES09550199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95812678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595493	regulatory region 595493			within coordinates
Rr595494	regulatory region 595494			within coordinates
Rr595495	regulatory region 595495			226 bp proximal
Rr595496	regulatory region 595496			544 bp proximal