rs28114713 SNP Detail

Summary

• ID
  rs28114713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95813449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCAACTA GAAAGCCAGA
  CCCCATTTCC TCTTCCTGTC TCTTGGCTTC AAATCTCATT AACTTTATAT TTTCTTGGTC
  CCGAGCCACA GACAATCAAT TGTTTGAGAG GAGGGGAATT TAGGAGATAA CTCAGCTGGC
  TGGCTGTATG TGAATTTAAT GTCTAATAAA GTAACTGTAG TTCAGTAAGC AAATTGTTAC
  R
  ATGATTCCAA TTATTCAACC TGGAAAGGGT GAATCGTGGG TTCCTGTTGA GTGAAAAAAG
  ACATTTGCAA GAAGACAAAT GGTATTCCAA TGAATGGAGT TTCAGTAGAA TTGTTACCTT
  AAAATCCTTG CTGTGTGAGA GAGGCTGCTG AGCAAAGCCC CCTTTAAGAG TTTTGCGATA
  ACAAAGTTAG AAACCCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38253041	NES09550102	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28114713					SNP	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253041	NES09550102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95813449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595493	regulatory region 595493			659 bp distal
Rr595494	regulatory region 595494			756 bp distal
Rr595495	regulatory region 595495			48 bp distal
Rr595496	regulatory region 595496			206 bp distal