rs28114709 SNP Detail

Summary

• ID
  rs28114709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95813624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTTCAG TAAGCAAATT
  GTTACAATGA TTCCAATTAT TCAACCTGGA AAGGGTGAAT CGTGGGTTCC TGTTGAGTGA
  AAAAAGACAT TTGCAAGAAG ACAAATGGTA TTCCAATGAA TGGAGTTTCA GTAGAATTGT
  TACCTTAAAA TCCTTGCTGT GTGAGAGAGG CTGCTGAGCA AAGCCCCCTT TAAGAGTTTT
  K
  CGATAACAAA GTTAGAAACC CATCTCACCC CACAGAAGAA TTGCACCGCC TTGTATTGTC
  ATAGAATATC ATTAGAAGCA GAAAATATTT CTAAAAGCCA TTCTCTGACT GAGAATTGAA
  TTCTTTGGAG CGGGGTTTAG CAGCATCTCA CAATCGTAGA TTGAGTATAA TAGTAGAATA
  TGGATTATTT CAAAGCAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38253037	NES09550106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28114709					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253037	NES09550106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95813624 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595493	regulatory region 595493			834 bp distal
Rr595494	regulatory region 595494			931 bp distal
Rr595495	regulatory region 595495			223 bp distal
Rr595496	regulatory region 595496			381 bp distal