rs28109578 SNP Detail

Summary

• ID
  rs28109578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98109005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAACAG GACCAAGGTT
  GGAATTAAAA CTTTGGTTAC CCCTGGATTC TATGACCCTC TGGAGAAAGG ATGCCAAACT
  TCAGATCCAG TCTACTGGTT TACTATTGGG ACTCTGTAGT TAGACTGGTC CAAAATAACC
  TCTGGACGTA GACTCTATAA CCCCAGGGAC ATTTTTCACC TCAGACATCA GAACCACACT
  K
  CATATTTACC TCAGATTTCA CTGGAACCAA AGCTCCCGTT TCTCAGAGGA CTGTGGGCAC
  TTGGGCCAGC ACTGACCTCC AAAGCCACTG GGATGGAGAT CTTGTCACCA GGTGCTCTCT
  GGTTCCACAA AAGCTGGAGG CCTGGTTACT CAGAGCTCTC TGGTTAGCAG AAAGACGTGG
  AAGTTTTAGG TTTAATCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38245002	NES09528938	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109578					SNP	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245002	NES09528938	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98109005 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	792 bp proximal
Rr595710	regulatory region 595710	574 bp proximal