rs28109576 SNP Detail

Summary

• ID
  rs28109576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98109040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCCCTG GATTCTATGA
  CCCTCTGGAG AAAGGATGCC AAACTTCAGA TCCAGTCTAC TGGTTTACTA TTGGGACTCT
  GTAGTTAGAC TGGTCCAAAA TAACCTCTGG ACGTAGACTC TATAACCCCA GGGACATTTT
  TCACCTCAGA CATCAGAACC ACACTGCATA TTTACCTCAG ATTTCACTGG AACCAAAGCT
  M
  CCGTTTCTCA GAGGACTGTG GGCACTTGGG CCAGCACTGA CCTCCAAAGC CACTGGGATG
  GAGATCTTGT CACCAGGTGC TCTCTGGTTC CACAAAAGCT GGAGGCCTGG TTACTCAGAG
  CTCTCTGGTT AGCAGAAAGA CGTGGAAGTT TTAGGTTTAA TCTTGGTTAT TAGCCGCTGC
  TCCTTAGAAC CAGAAAGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38245000	NES09528942	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109576					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245000	NES09528942	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98109040 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	757 bp proximal
Rr595710	regulatory region 595710	539 bp proximal