rs28109574 SNP Detail

Summary

• ID
  rs28109574
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98109140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTCTGG ACGTAGACTC
  TATAACCCCA GGGACATTTT TCACCTCAGA CATCAGAACC ACACTGCATA TTTACCTCAG
  ATTTCACTGG AACCAAAGCT CCCGTTTCTC AGAGGACTGT GGGCACTTGG GCCAGCACTG
  ACCTCCAAAG CCACTGGGAT GGAGATCTTG TCACCAGGTG CTCTCTGGTT CCACAAAAGC
  K
  GGAGGCCTGG TTACTCAGAG CTCTCTGGTT AGCAGAAAGA CGTGGAAGTT TTAGGTTTAA
  TCTTGGTTAT TAGCCGCTGC TCCTTAGAAC CAGAAAGGCC ATCATGTCTG CTTTACACTC
  TCACCCTGAA TACTGGCATG CCCTATCCAG TCATCTTTTA AAAAATCTAG AAGCTTTTAC
  CCTGCTAATT TATCCACTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244998	NES09528948	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109574					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244998	NES09528948	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98109140 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	657 bp proximal
Rr595710	regulatory region 595710	439 bp proximal