rs28109573 SNP Detail

Summary

• ID
  rs28109573
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98109518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTGCTA ATTTATCCAC
  TGTCGTAGCT AATCTTGGCT GTCAACTTGA CATACCTAAG AAGAGGTAAA AAGTTATTAT
  TATTATTATT ATTATTATTA TTATTATTCA TTTTTTTCAA TAAACATAAA TAGGGGTTAA
  ACATATTAAG GGATTTGTTG AAGTGTGTCT TACAAGTCAG TGGGTAAACC AACCTTCAAA
  K
  TTAAGATTTT GAACTGTAGA CAGTGTAAGA ATGGGCCAAA CATAAGAAGT ACAGAAAGGC
  TGGGCAGGGG TGATGCACGC CTTTAATCCC AGGACTAGAG AAGCAGAGGC AGGCAAATCT
  CTGAGTTCAA GGCCAGTCAG GTTTACTGAG CAAATCCCAG GACAGCCAAA GCTACACAGA
  GAAACCCTAT CTAAAATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38244997	NES09528950	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28109573					SNP	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244997	NES09528950	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98109518 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	279 bp proximal
Rr376892	regulatory region 376892	1717 bp upstream
Rr595710	regulatory region 595710	61 bp proximal