rs28109571 SNP Detail

Summary

• ID
  rs28109571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98109984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATGAT GGATACTGGG
  TGCTCTAAAT GAGAGAGAGC AGAAAGGGAA ACAAGTCCTG GCCGTCTCTA ATTCGGTCTT
  TTTTGTTCTC AGACAGGCCT GGGATGTTGT TGCTGCCAAT ATCTGATCTG ATGAGTGAAG
  TGTAATGAGT GTGTGCTTTT CTTTCTTGTA CAGATGTGAA CTCATTTCCC AAAATAGCCA
  Y
  GTCCAACTGT TAAAATCCCC AAGTTCCCAA ACTCTCTCAA CAGGAAGTAA GCAGTGGACA
  TCCAGATGTT TCTCCTCACA GTGTTTGTGC AATGTTTACA TTTATCTTTC TCGTGTCAGA
  CCATGACTTT ATAAAGTACT TCATTATGGC CATTGGTCCA AGACTGTAAG AGGGAAAATG
  AAAGGAAGCT TGAATACTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244995	NES09528853	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109571					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244995	NES09528853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98109984 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	within coordinates
Rr378	regulatory region 378	within coordinates
Rr376892	regulatory region 376892	1251 bp upstream
Rr595710	regulatory region 595710	within coordinates
Rr595711	regulatory region 595711	1592 bp proximal