rs28109323 SNP Detail

Summary

• ID
  rs28109323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97883869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGATA CCCAAATTGA
  GTACAGAAAC AGCTATTACT ATGTCAGTAA TAATATAGTA ATTTACATGC GGCAATAGAA
  GCCCACTAAG TAAGGCTATC TAAGTCATTG AACAAATAGG GCATAGATAG AAGGGAGTTG
  TGCTGGGCCT TCTGACGATC CAAGTTCGTA AGCTACAACA ATGACATTCT GGATTATTGA
  Y
  AGAGTTCAGA GATGATGTCA ATGAAGTGCG CAGTCAACTT ACATCCATAA CCAGACGAGA
  CCTAATGATT CAGGACAGGG AGGGCCTTGG TATCTGAACT TGAGAAACAC CTAGTCTCAT
  ATGCAGTCTC GACTGTATCC TCCGATACAG ACTTCCCTGT GTGGAGACAG TCAGCTTCCT
  CTGATGGCCA GCCCTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38246048	NES09539268	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss147084240	ENSMUSSNP1737758	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109323					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38246048	NES09539268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97883869 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68490	predicted gene, 68490			within coordinates
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595671	regulatory region 595671			1484 bp proximal
Rr595672	regulatory region 595672			1618 bp proximal