rs28109298 SNP Detail

Summary

• ID
  rs28109298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97887044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCAAGTG TCAGCCTGTA
  ATTGGTGGGA CAAAGAGAGA TGCTGGAAAA CTACACATTC CATTGTGCTG TGATTTTCTG
  GCTGTTGCAT GCACTGAGCC CACACTCGTG TGCACTGAGG CCGGATTTCC TTTGTTATGG
  TCTGTGGGAT ACATGCGATC TTAATGGTGC CCAGTAAAAT AGAAATGTTA TGATCTGTTT
  W
  GACAAGACCT CTTTAAGGGA ATTTTTTTAT TTATTTGCTA GAGTTTTTGC TTTTCGGTTC
  TTTTATCCAA GAGACAGTGC CTCCAGCACT TACCAAACAA GAGTCCCTAG ATATACACCC
  AACTGTGGGT TGCTTTGATG AGTAAAGTCC TTAAGAACTT TTAAGGTGAA CCTTTGCGGT
  TTCATTTTAA ACAGCAGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38246022	NES09539113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28109298					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38246022	NES09539113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97887044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68490	predicted gene, 68490			1547 bp upstream
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595671	regulatory region 595671			1558 bp distal
Rr595672	regulatory region 595672			1211 bp distal