rs28108965 SNP Detail

Summary

• ID
  rs28108965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98888738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACACTAC TGCTAAGTAC
  TTCCCTCTAC TAAACAACAA CAAAAAATTG AGGACAAAAA TAAGGTTAAA AAAATCTCAG
  TACTTTTCCT AAGATTAAAT TCAGAGATAT CTTTGTATTG TAAATGTAGA AAAGTAATTT
  CCTGAATCTT TTTGGTGTGA TAATAATGGA GGCTCTGAGT AAAGTGTTGG TGGGTCTTAT
  Y
  CTACTTGGCC CCTCTCTTGT CTAGGTTAAT TACTAAGCAT GGTTAAATAA TCACACTCTC
  TAGTCCTAGT GCAGTTCACC CAGGGTCATA GGCAATGTAA CTCTCTTACC AACCAAGGCC
  AGGAACTACT CTGCATGCTC TCCTGAAGGA GGCGCTCACC CAGGAAATCA CTGCAAGCAC
  ATCTCTTATA CACATCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38241315	NES09547058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28108965					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241315	NES09547058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98888738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595814	regulatory region 595814			138 bp proximal
Tssr42518	transcription start site region 42518			520 bp upstream