rs28108964 SNP Detail

Summary

• ID
  rs28108964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98889262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAATGTAT AGACCAGTTT
  ATAACAGCAA ACATATTTAA TAGAAATGTG TAAGGTATTT ACTGACAAAA TAGGAATATT
  TTGCTTTTTT CTAACTCAAG TAAAATAAAA AAATTCATAC TTACTTTGAA CTTAAATACA
  TCTTAAAATT AAGAATAAAT CAAATACTTC AATAACTCTC ATAAGTGGAT AGCATGTCCT
  Y
  GGTTTACCTT ACTGCCAATG ATTGACCGAA CTTCATCATC TGGTGATGTG GGAGTCCCAG
  ATATATCTGG GTTACTGTTG CTAAGGCTTC GAGACCGATT TAAGTTAAGG CTCGCAGGTC
  TCACTGCAGA CCTAGCCATT GTGGCATAAT GCACTGATCC TCCCAAACCC CCGGGACCTA
  GAGTTGCAAT AAAGAGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss38241314	NES09547060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs28108964					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241314	NES09547060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98889262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr595814	regulatory region 595814			365 bp distal
Tssr42518	transcription start site region 42518			1044 bp upstream