rs28108622 SNP Detail

Summary

• ID
  rs28108622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80921919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGCAGCA ATCGTATCAG
  AGTGGGGAGG TCCACAGATT ACAACCGGAT GGCTTCTACT GTAGTGTACA ACTCTAAGTA
  ACAGATTATC CTTTGTAGAA AAGACCTTAT CCTTGGCAAT TCCATATGCC TCAGAGTAAA
  CCTTACTACT CATTGCTGAT GAGTGGGAAG GGATTGGGTA GCAGGGCTTA GCTTTTGTTC
  M
  GTCTGGCAGT GTGACCACTG ACCAAGACAG AGAGTTATTA TTGCATAATT CTTAAGTCAC
  ATTACTGGAT TGTTTGGCTT GGCCAGAAAT TAAAAGCTTA GCACAGACTC ACTGTGGTGA
  GTGACTGAGG ACTTGCCCCT CTCCTTTTCT ATGACAGCGT TGTCCTTGCT AAACACTCAC
  CACACCCAGA GTCAATTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38233244	NES09615445	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28108622					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38233244	NES09615445	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80921919 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	1939 bp proximal