rs28108609 SNP Detail

Summary

• ID
  rs28108609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80923350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAGGAC AAAAGTACCA
  CAAGCAGAGA AAAGGATGCC CCAGGACCTC CACAATGCTG GTATATGGTG GCCGACAGAA
  GCAGCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTAT GGGACACCCC
  TATGGGACAC CCCAGAGAGT TTCTAAAACT TTAGCCTCCA TCAACGTGAG TTTCAGAGAC
  Y
  ACTCAGAGAA TGACATCAAC AGGGCTTTCT TTTATTATTC TTTATTGACA AAAATTACAA
  AAGAGTTTTT TTAAGAACAT CACAGTTCTT TGGGAAGTTT CTTCAGAAAT AGTCAATGAA
  GCAGAACAAC TTCATAACCA TAAAAGTTGG CAAGTTGCCC TGATAAAAAT TGTTACCATA
  TTTAATAAAC TCTGGGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38233231	NES09615458	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28108609					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38233231	NES09615458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80923350 () rs orientation: forward

Symbol	Name	Function Class
Rr594193	regulatory region 594193	508 bp proximal