rs28106610 SNP Detail

Summary

• ID
  rs28106610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95728394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTCATT TGGCCTGGAA
  TCTTTTTCAC AGGGTCCTTC TCCTGGTAAG AACATTACAG CATGAAGCCC AGTAATACAA
  AAGAAGATTA AACTCAGTAA TGCATGCAGG AGAGGAGGGA GAAAGAGCCA GCTATGTTTT
  CTCAAGTAAC ACAGTTGGGA AATCAATCTT ATATTTAATG GGCCATACAT ACATTTAAAG
  Y
  GATCCTATTT TTTCTGTCTA TTGTCTTAAT GACCTTTATA ATTCCATGCA GGGAAGACAT
  TTTAAGACAG ATTTCCTGAT AAAGCTTTAT TATAGAGTCA ATTAAATTTG GGAGGGGTTC
  CATCTGTTTG AAAAAGTATC TGAGTGTACT GATTTTCTAG ACAAAAATGT GCATTTTAAT
  GAAGCATTTT GATAACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253729	NES09554315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	T	T		C	C	C		C
ss45622677	mCV25208034	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss147067567	ENSMUSSNP6493869	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321215897	CHEV_4_95506848	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28106610					SNP	C	C	C	C	C	C	T	T	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253729	NES09554315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95728394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr595473	regulatory region 595473			286 bp proximal