rs28106609 SNP Detail

Summary

• ID
  rs28106609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95728445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTACAGC ATGAAGCCCA
  GTAATACAAA AGAAGATTAA ACTCAGTAAT GCATGCAGGA GAGGAGGGAG AAAGAGCCAG
  CTATGTTTTC TCAAGTAACA CAGTTGGGAA ATCAATCTTA TATTTAATGG GCCATACATA
  CATTTAAAGT GATCCTATTT TTTCTGTCTA TTGTCTTAAT GACCTTTATA ATTCCATGCA
  R
  GGAAGACATT TTAAGACAGA TTTCCTGATA AAGCTTTATT ATAGAGTCAA TTAAATTTGG
  GAGGGGTTCC ATCTGTTTGA AAAAGTATCT GAGTGTACTG ATTTTCTAGA CAAAAATGTG
  CATTTTAATG AAGCATTTTG ATAACAGATA TTTTCCCATA ATGTTCATCT TGGAAAAAAA
  AAGTTTCCTT CTTCCTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38253728	NES09554316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28106609					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253728	NES09554316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95728445 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr595473	regulatory region 595473			235 bp proximal