rs28106442 SNP Detail

Summary

• ID
  rs28106442
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80684088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTTTAAA TGTGTGTTTT
  TAGAGTTCCT AAAAGTTAGA TCTCATAAAT CTGCTAGTTT CAAAAAAATC TGCAGCTTTC
  TGCATAGTGG CCCTTGTATT TCAATTTAAA CCAAATGGGA GCAAACTTAT TACTTCTATT
  CTGAAAGGTC ATTTTTCATC AAGATTGTAT TAGAAAATAA ATCATTTAAA GCCATCCTTC
  K
  GATAGTCCCT TGCATGAATG TCTTAACGTG CAATCAGAGG GCTGCTGTAA TTTGTTAATC
  CAAAATGGTC TGACACTGCC ACCTTCTGGT CAATGGTTGA TATTCTGCTG AAGCCAGTCT
  TTTGCTGACA TGAATGACAT AATTAGAACA ACCTGCATAG GACTGCCATC AATCTCAAAA
  AGAGGTTTGA AAGTCCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38234169	NES09617172	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28106442					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38234169	NES09617172	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80684088 () rs orientation: forward

Symbol	Name	Function Class
Rr594173	regulatory region 594173	within coordinates
Rr594174	regulatory region 594174	73 bp proximal