rs28106435 SNP Detail

Summary

• ID
  rs28106435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:80686027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTAGAA AAGAAACTGA
  CACTGTCTCT ACAGTGTTGA GTAATTAAGC AGGCCTAGTG TGCCTTCTGG AATTACAGAA
  CTTAAGTGAA GATTAATGAG GCCTGAAAAT GTCAGGCCCC AAGGTCTCCA AACACGGTAA
  GGCGTCTCCA CTTTCTCCAC GTTGAACAGC TGCCCATTTC CAAGGCAAAC AAATTGTCCT
  Y
  GTTCTTCCTT AGATTCAGGA ACAGCTCAGT AGATGTATGG CAAACAATGT TGCTTTTAAC
  AAAATATCTT TCACCATCAT TTGATTTCCC TTCCATGGCC TCTGACCTGG ATTGCAGCAT
  GTACAGAAGA AGTAGCCATG TCGGCTCGGC TCTGAGTCTG AATCCTAAAC TCCTTCCTAC
  ACTGGACAAC AAAAGGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38234162	NES09617096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28106435					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38234162	NES09617096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:80686027 () rs orientation: forward

Symbol	Name	Function Class
Gm57729	predicted gene, 57729	1326 bp upstream
Rr594173	regulatory region 594173	1682 bp distal
Rr594174	regulatory region 594174	1845 bp distal