rs28105034 SNP Detail

Summary

• ID
  rs28105034
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88843140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCTCAGA ATTGTAATAT
  TTTACTGATA AATATGTCAA ATTTCATGTA TGTATTAAAT ATCAGCTTCT AAAAGTAGCT
  CATGAACAGC AAAGTATCCA TCCATTCATT TAATCCAAGT TGGAAACTAA CGGATTTAAG
  AATTTCAATT TCTGGGAAAA CATCAAAATA GCTGTTCCCA TATCCCTAGG TCCCCAACAC
  M
  TTTCTTCATC CTCCACAGCA CACTCCTAGA ACACTCAGGG GCAATATGAA AACTGTAACT
  CCAGGCCTTT CTTAAGTACC CTGTGTTTTA GACTCTTAAC TGACCATGTA GAAATTTATC
  ATACAAAAAG TCTAGTGCTG CTATGAATGG CTGGACATAT TAATGTCAAT CTCCAAAGAG
  CAGAGCAAAA AACATACAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38237263	NES09564034	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28105034					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237263	NES09564034	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88843140 () rs orientation: forward

Symbol	Name	Function Class
Gm49890	predicted gene, 49890	within coordinates
Rr595141	regulatory region 595141	983 bp proximal
Rr595142	regulatory region 595142	1817 bp proximal