rs28105023 SNP Detail

Summary

• ID
  rs28105023
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88843904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGACAGTTA TTTGAGCAGA
  CTGGATAGTG GAATCCCTTT ACTTAATTCA GAGAAGTGAA AGCTAGTCTC CATAAACACC
  CCTAATGTAT GTGAAAGGCC AAATCTACAC TAAGCGTACT CAGGATACAC ACTGTGGGTG
  GGGCTATGGT TCAAACTGGA AAGAGCAGTA TGCAGATGTA GAAGGATGCC CTTGGTGAAT
  S
  TCTTTCCCTT TGTTCCCCAA ACCAAGACAA AGCTAGTAGC CACAAGTTTA GTTTAGTCTG
  GAAACTAAAG GAGTATGCAA CTGAGACTAA CTTTCTAAAC TTTCCTCTGG TCCATTAAGT
  TCCCATGGGT GTTCATACAG AAACTGTCTT GGAAAATGCA AATCTGACTG TGGTGGGTTG
  AATGAGAATG TCAGTCCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38237252	NES09564046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28105023					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237252	NES09564046	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88843904 () rs orientation: forward

Symbol	Name	Function Class
Gm49890	predicted gene, 49890	within coordinates
Rr595141	regulatory region 595141	219 bp proximal
Rr595142	regulatory region 595142	1053 bp proximal