rs28105022 SNP Detail

Summary

• ID
  rs28105022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88843980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCTAAT GTATGTGAAA
  GGCCAAATCT ACACTAAGCG TACTCAGGAT ACACACTGTG GGTGGGGCTA TGGTTCAAAC
  TGGAAAGAGC AGTATGCAGA TGTAGAAGGA TGCCCTTGGT GAATGTCTTT CCCTTTGTTC
  CCCAAACCAA GACAAAGCTA GTAGCCACAA GTTTAGTTTA GTCTGGAAAC TAAAGGAGTA
  Y
  GCAACTGAGA CTAACTTTCT AAACTTTCCT CTGGTCCATT AAGTTCCCAT GGGTGTTCAT
  ACAGAAACTG TCTTGGAAAA TGCAAATCTG ACTGTGGTGG GTTGAATGAG AATGTCAGTC
  CAAAGTTTAA ACACTTAAAT ACTCAGTCCC CAGCTTGTGG AACTGTTTGG GAAGGATTAG
  GAGGTTGGCC TTAGAGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38237251	NES09564047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28105022					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237251	NES09564047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88843980 () rs orientation: forward

Symbol	Name	Function Class
Gm49890	predicted gene, 49890	within coordinates
Rr595141	regulatory region 595141	143 bp proximal
Rr595142	regulatory region 595142	977 bp proximal