rs28102880 SNP Detail

Summary

• ID
  rs28102880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81951789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGACAT TGAGATGGAA
  AATTAGATGT ATATAAGATA CCAAATTGGT CCTAGTTATA ATGCATTAAT TAAAAAGACT
  ATAAACAACA GCTCCTTATA TTCTTTGCTT ATGAAGTTTG CACAAAAAGG AAAATTTCCA
  TTGGGAAATA TTTCCCGTGT TATCTGGAGA CTGTAATGAG TCTAAACAAA GCTAAATACA
  K
  GGCTCCTGCA GAGTACGTGA AGGGGAGGAG TCAGCTTCCA TACCTGTGGC TAGGAGGGAG
  GAGACCCAGT TACTAAATTT AACTGTCAAA GAAAAGTGGA GTTTCTACAG AGGCGTCTTG
  TAACCTTAGA CTTTGGACAA GTTAGTTTCA TCCATAAGAA GAAAAGAATA AAAATACCCA
  TATCAGAATA TTGCAGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38229205	NES09593926	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102880					SNP	G	T	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229205	NES09593926	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81951789 () rs orientation: forward

Symbol	Name	Function Class
Gm11264	predicted gene 11264	within coordinates
Rr594276	regulatory region 594276	1608 bp proximal