rs28102876 SNP Detail

Summary

• ID
  rs28102876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81952194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAGAATC TTCAGAAGAT
  GGAAACCAAA GTAAATAAGG CCTCTTTCTC CAAAATCATA AGAGCCACAT ATTTGACTGA
  TATCTTAGTG GACCTTTATA CTTTAGTATA AAAACTTATT TTAGATGGTG ATATCCAAAT
  ATCATGCTGA GAGAAGAATT TTGATGGGCG TGATTTTTTT CAAGAGAACA AAAAGAGTAA
  Y
  GGTTCAATTC AAATATTAAT TTTAAAGCTC TGTTGCCTAC TCCCTTCTCA AGAAGGGAGG
  TACATCACAT AGTGAGAGAT TATAATTTCC AGCTGCCAGG CACAGGTGCG TTCAGCTTAT
  GGATTTATCC ATAGGATTCA TGGAGACCGA AGTCAAGCTG GGAAGGCAGC TGTTGCTGAG
  AAGATGGCCA AGAAGGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38229201	NES09593934	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102876					SNP	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229201	NES09593934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81952194 () rs orientation: forward

Symbol	Name	Function Class
Gm11264	predicted gene 11264	within coordinates
Rr594276	regulatory region 594276	1203 bp proximal