rs28102860 SNP Detail

Summary

• ID
  rs28102860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81955512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGACTCG CTCCTCAAAT CTGAAAGCAA ATTTAGAAAG
  AAGAAATTGG GATGAGACTT CACTATATCT GGTGGCACCA CATCCCAGGA AAATGATCAA
  W
  GTATCTTAGA GATAGGATTC TAAGACGAAG TAAATAGGTG AGTCACAAAT TAGGAAGGTT
  GCCTCATTTC TGCTTTTCAT GTATCCTGAG AAAAGAGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38229185	NES09593965	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	A	A	T	T	T	T	T
ss146857318	ENSMUSSNP7178840	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102860					SNP	T	T	A	T	T	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229185	NES09593965	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81955512 () rs orientation: forward

Symbol	Name	Function Class
Gm11264	predicted gene 11264	within coordinates
Rr594276	regulatory region 594276	1756 bp distal