rs28102859 SNP Detail

Summary

• ID
  rs28102859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81955539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACCCTCT TCATGTTCTT
  GGTGGGAAGT AAATGGGCTC ATTTCTCCTG TCCAACCAAA CCAGGTCTAC CCACAATGAC
  TCGCTCCTCA AATCTGAAAG CAAATTTAGA AAGAAGAAAT TGGGATGAGA CTTCACTATA
  TCTGGTGGCA CCACATCCCA GGAAAATGAT CAATGTATCT TAGAGATAGG ATTCTAAGAC
  R
  AAGTAAATAG GTGAGTCACA AATTAGGAAG GTTGCCTCAT TTCTGCTTTT CATGTATCCT
  GAGAAAAGAG GAAAGATTCC AAGTTTCCCC TTAGACTTAG CTCAGGTCTC CAATCCAGAA
  TAAACAGCAA TAAGGGGCTG CTACAAGAAG GATACAGAGG GTTTTCTACC AGAAACAACA
  GGTAGATATC ACAGTTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38229184	NES09593966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102859					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38229184	NES09593966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81955539 () rs orientation: forward

Symbol	Name	Function Class
Gm11264	predicted gene 11264	within coordinates
Rr594276	regulatory region 594276	1783 bp distal