rs28100020 SNP Detail

Summary

• ID
  rs28100020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88395518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAATGCT GCAGCAAGCG ATGCCCCTGC AATCGCCTTT
  AATACCCTCC ACCGGCGCCC CATTGGTCCC AAGAAAGCAT CTCTTCTAAA CAGCAGTTTC
  Y
  AGTTGGCTGG CATTGTCTGC ATCAGCAATT CTTGGTCTCT CGTGCAGTCT TCAATTAGGA
  GCTCCTGTAG GAGCTGTGCA GAGCAGCCCC CTGCCCCTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38202047	NES09562206	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28100020					SNP	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38202047	NES09562206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88395518 () rs orientation: forward

Symbol	Name	Function Class
Rr594997	regulatory region 594997	38 bp distal