rs28099642 SNP Detail

Summary

• ID
  rs28099642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87129915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAGTGT ATGAGACTTG
  CAGAGCATTA ACACATCAAA ACATATGTTC CCTAAGCCCG TTATCACATC TCACCTTCAC
  TTAGACTTTC AAGGTCAGAG CTATTTCTGG CTAGCTATAT CACTGGACTT AAAATAAAAG
  GCAGCAGAAA ATAGTAGATT CGTAATGGTC CTTCATAGTC AGCCTAAAAA AGAGCAGCCT
  R
  GCTCATCTGA ATGCCATTTA AATAAATCAG TTTCTTGCTC AAGGCTACAG AACTCCATCT
  ACAAAGCCAC CCGTTACTAT GAAGCTGACG CAAGCTAGAC TCCAGGGAGA AGATGTTTCC
  TGGGCCCCTA GGAAGCCCCT AGAGCTTTGA ACTAATTATG CATTAAAAGT ATAATCACGT
  GGTTAAGCTG TTCTCCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38206280	NES09581619	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28099642					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38206280	NES09581619	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87129915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594869	regulatory region 594869			720 bp distal
Rr594870	regulatory region 594870			within coordinates
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant