rs28095493 SNP Detail

Summary

• ID
  rs28095493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86983304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGGAG AATAAAAAGA
  AAAGAAAAAT CCATGATCTA TACTATAGGG AAGATTGTAA TATATATATG TATATGTATG
  TATGTATGTA TGTATGTATC TATCTATCTA TCTACCTATC TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCTATC TATCTATCTA TATATATATA TGTGTGTGTG TGTTTATGTT
  Y
  GCTTATCACT TGTGATCATG ACATTCTGGG ATTTAGGACA CTGATGTCAC CTGCTTACCA
  CCTGTTCCTG AAACCATCAG GCTACTACTA TCAAGCCAGC AGAGAGGGAA AGAAATGAGG
  GCACAAAGGT CCCTTTGAAA GGCTCGGTGT GGCCAATCTG CAGGCAGGTG AGCAGGCTGC
  TGGCTGGAAG ATAACTCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38207023	NES09568933	PERLEGEN	MM_PANEL2	f	SNP	C		T	C		T	T		T	T		C
ss45647267	mCV23971586	ABI	CRAMUS_MOUSE	f	SNP		C			T	T
ss321199705	CHEV_4_86710971	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28095493					SNP	C	C	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38207023	NES09568933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86983304 () rs orientation: forward

Symbol	Name	Function Class
Rr594860	regulatory region 594860	1792 bp distal
Rr594861	regulatory region 594861	283 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	Intron