rs28094548 SNP Detail

Summary

• ID
  rs28094548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98133020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACATA TGTTTCCTTT
  GGGTTCTGTT GGTTCCACTT AGTAACGTAA CCTTCCAAAC CACAGTGAGA CTTGGTGGAT
  TCTGTGTCAC ACCCTGGAAT CGGGACAACT CACTGGAAGT TGTAACTTTC TTCCTTCCAT
  CTAGGACTGT ACTTTGGAAA CTTGTCTAAA CATTCCCAAG CAAGTACAGG AAGGACTGCC
  Y
  GGGCCAGTGT CTCCCTGACT GTGAGTTCCA AGGAAGAAGC AGAGAAGCCT AGGTTAGGGG
  GAAGCAGCCA ATTACATAAA ACCATAGTTG TAATCCTTGA TATCAGTATG CTGTATACTG
  GCTTGAGGCA CTCTCAGCAG AGTTTTCTTG CTTGCTTTCC TGTACCATGT ATATGGGTAC
  AGTACTTATT TTTCAATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38244972	NES09527675	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28094548					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244972	NES09527675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98133020 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	477 bp upstream
Rr406792	regulatory region 406792	within coordinates
Rr595714	regulatory region 595714	526 bp distal
Rr595715	regulatory region 595715	1067 bp distal
Rr595716	regulatory region 595716	within coordinates
Rr595717	regulatory region 595717	1374 bp proximal