rs28094547 SNP Detail

Summary

• ID
  rs28094547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98133055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGTAA CGTAACCTTC
  CAAACCACAG TGAGACTTGG TGGATTCTGT GTCACACCCT GGAATCGGGA CAACTCACTG
  GAAGTTGTAA CTTTCTTCCT TCCATCTAGG ACTGTACTTT GGAAACTTGT CTAAACATTC
  CCAAGCAAGT ACAGGAAGGA CTGCCCGGGC CAGTGTCTCC CTGACTGTGA GTTCCAAGGA
  R
  GAAGCAGAGA AGCCTAGGTT AGGGGGAAGC AGCCAATTAC ATAAAACCAT AGTTGTAATC
  CTTGATATCA GTATGCTGTA TACTGGCTTG AGGCACTCTC AGCAGAGTTT TCTTGCTTGC
  TTTCCTGTAC CATGTATATG GGTACAGTAC TTATTTTTCA ATAGTGCTCC AGTTATAAAA
  GGATGAAATA CATAAGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244971	NES09527676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094547					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244971	NES09527676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98133055 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	512 bp upstream
Rr406792	regulatory region 406792	within coordinates
Rr595714	regulatory region 595714	561 bp distal
Rr595715	regulatory region 595715	1102 bp distal
Rr595716	regulatory region 595716	22 bp distal
Rr595717	regulatory region 595717	1339 bp proximal