rs28094546 SNP Detail

Summary

• ID
  rs28094546
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98133295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC AGACCTTTTA GCAGTGGTCA
  S
  GGAAAGATTT GGCTGGTCTA TCTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38244970	NES09527677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	G	C		C	C	C
ss321220431	CHEV_4_97911749	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28094546					SNP	C	C	C	G	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244970	NES09527677	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98133295 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	752 bp upstream
Rr406792	regulatory region 406792	8 bp distal
Rr595714	regulatory region 595714	801 bp distal
Rr595715	regulatory region 595715	1342 bp distal
Rr595716	regulatory region 595716	262 bp distal
Rr595717	regulatory region 595717	1099 bp proximal