rs28094545 SNP Detail

Summary

• ID
  rs28094545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98133699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC TTAGCCTTAA GTGAGAAACA
  K
  CAGCCTTAAT ATTAGGTAAA GCACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38244969	NES09527587	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G		G	G	G	T
ss321220440	CHEV_4_97912153	CHEVERUD	SCREENING_POP	f	SNP							G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28094545					SNP	G	G	G	T	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244969	NES09527587	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98133699 () rs orientation: forward

Symbol	Name	Function Class
Gm70434	predicted gene, 70434	1156 bp upstream
Rr406792	regulatory region 406792	412 bp distal
Rr595714	regulatory region 595714	1205 bp distal
Rr595715	regulatory region 595715	1746 bp distal
Rr595716	regulatory region 595716	666 bp distal
Rr595717	regulatory region 595717	695 bp proximal