rs28094527 SNP Detail

Summary

• ID
  rs28094527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98142913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGTAGC TGCCATTGCC
  ACAGACCCTG AAATAACCGG TTGCCTTCCA CCAACACCAA CACCACCACC ACCACCACCA
  TCTCCTGTCC CACATAGGAA ACAGCCCTGG TAATCTCAAA GTCCTTACCA GCCAGTCCTT
  CACTGTCCTC AGTCCTGAGA AGAGCAGTTG GTGCTCACCA TAAACGCACT GTATGAAACA
  Y
  ATCCGATTGC GCTGGCTGGT CCGCTAACTT GGCCTCCTCT GAAATTGCCC CCTTTGGATG
  TGCAAGGACA GTGTTTATCA TCCTGCTAAG CCCAATACTT CAAATAGAAC AATTTCTGTC
  TCTTCCAAAA TCAGGTGAAC TTTAAACATG TAGGATCCTA ATACCTTGTT CCAGAGACTG
  GGGTCCCTGT GACATGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244951	NES09527258	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094527					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244951	NES09527258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98142913 () rs orientation: forward

Symbol	Name	Function Class
Rr595718	regulatory region 595718	272 bp proximal
Rr595719	regulatory region 595719	362 bp proximal