rs28094525 SNP Detail

Summary

• ID
  rs28094525
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98143648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCGGTG AGCACAGCCT
  CACGCAGCCA TTGAAGATTC TGGCCAGCAC GGAGGCCACA GGCCCTGTCT TCCATATCAT
  AAACGTCTGT GTCTGTCTCT GCCTCCTGCT CAGAGCTGCT CCTTCCATTA ATACAGGAGC
  TGACAGATTG GTTGAGAATC TGTAACTAAT ATTTTGAAGC CATAAGAGAT GATTGTGCTG
  K
  GTCTAATTAC AGAGTTGATC ATCTTAGCTG ATTATGATAG ATGACTCTTG ATGGTGGTCA
  GAGCCTCCTG TATATTTTAG GTGGAATGCT TTCTTTTGAC ATTTACTTTA CAGAGACATA
  TGTGCATCCT ATTTTAATTA ATGGAAGAAA TGATTCATTC ACAAGTGAAA GATTTAATTA
  AATAAAGGGT CAGTGCGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244949	NES09527261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094525					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244949	NES09527261	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98143648 () rs orientation: forward

Symbol	Name	Function Class
Rr595718	regulatory region 595718	85 bp distal
Rr595719	regulatory region 595719	352 bp distal