rs28094524 SNP Detail

Summary

• ID
  rs28094524
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98143754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCAGAGC TGCTCCTTCC
  ATTAATACAG GAGCTGACAG ATTGGTTGAG AATCTGTAAC TAATATTTTG AAGCCATAAG
  AGATGATTGT GCTGTGTCTA ATTACAGAGT TGATCATCTT AGCTGATTAT GATAGATGAC
  TCTTGATGGT GGTCAGAGCC TCCTGTATAT TTTAGGTGGA ATGCTTTCTT TTGACATTTA
  S
  TTTACAGAGA CATATGTGCA TCCTATTTTA ATTAATGGAA GAAATGATTC ATTCACAAGT
  GAAAGATTTA ATTAAATAAA GGGTCAGTGC GGGTCAGCCA TGAATTGCAA AATACCTTAG
  ATGCTCATTG TAGTCCCCGG CATCTCTGCA TGCTGTCTGG AGCGTGCATG GCAATAAAGA
  CTCCCCTGCA AAGGGACAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244948	NES09527262	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094524					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244948	NES09527262	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98143754 () rs orientation: forward

Symbol	Name	Function Class
Rr595718	regulatory region 595718	191 bp distal
Rr595719	regulatory region 595719	458 bp distal