rs28094523 SNP Detail

Summary

• ID
  rs28094523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98143844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGTCTA ATTACAGAGT
  TGATCATCTT AGCTGATTAT GATAGATGAC TCTTGATGGT GGTCAGAGCC TCCTGTATAT
  TTTAGGTGGA ATGCTTTCTT TTGACATTTA CTTTACAGAG ACATATGTGC ATCCTATTTT
  AATTAATGGA AGAAATGATT CATTCACAAG TGAAAGATTT AATTAAATAA AGGGTCAGTG
  Y
  GGGTCAGCCA TGAATTGCAA AATACCTTAG ATGCTCATTG TAGTCCCCGG CATCTCTGCA
  TGCTGTCTGG AGCGTGCATG GCAATAAAGA CTCCCCTGCA AAGGGACAGA ATGAGTTTCA
  TTCATTCACT CAAAAAATAT TAATTGGGCC CCTGGTGTGT TTGAGGCACT GTGCTAGACC
  CTGGGGAGGC AATGGACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38244947	NES09527263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28094523					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244947	NES09527263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98143844 () rs orientation: forward

Symbol	Name	Function Class
Rr595718	regulatory region 595718	281 bp distal
Rr595719	regulatory region 595719	548 bp distal