rs28094517 SNP Detail

Summary

• ID
  rs28094517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98144677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACATAT CACATGGTTG
  TCAGCCAATA CCTGGATGTC CCAGGGCACA GCAAGATCCC ATTGATGTTG ACAGTTCACA
  TTCTTACTAT GTGGTTGCTA CAAGTAGTTT CTTCTCTCTC TTCTTTAACT AGCCTCATAC
  TACTCTTTTC TAGTTGCTTT ATTCTTTTAT GATTCCGTTA TCTGATGGCC GAGGTTGTAA
  Y
  TTTATTGCTA CTAGACCCAG CCAACATCCA CTAACACTGA GTAATTGGTA AGTGGATAGT
  TGGGGCTCCT GCTTCCTGAT TTAGGAACAG AACAGCGAAT AAACAAGTCC CTCAACGCTT
  GCCAAGACAG GTGACATAAA ACCTAAGTGG CCAAACCTAT ATTGCCTATC GTGCAAACTA
  CTTGCCTTGC CCTCTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244941	NES09527193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094517					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244941	NES09527193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98144677 () rs orientation: forward

Symbol	Name	Function Class
Rr595718	regulatory region 595718	1114 bp distal
Rr595719	regulatory region 595719	1381 bp distal