rs28094265 SNP Detail

Summary

• ID
  rs28094265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97894999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTTAA AGTAAGTCCT
  GGCTATAGGC TGAGCATAAA TCTGAGTGCT AAACTGGGGA GACCTCTCAA GAACACAGAG
  GTAACATAAC AGGACGCCTC ATGTTGGATT AGTGAGAGCT CAATGATGGT AATCACCTTG
  ATCATTACTG GCTTAAGCCT TTGCCCTTGA TCATCTACTG TGTGTTCTTG AGCTGATCCT
  R
  GAGCTGACCA CTATCAGCCA ATTTTATTTA AAAATATTCA CATGTGTATA ATTATGAGTG
  ACTGATTTGA GGACTGTGTC CTAAAGCTTG GTTTATTACA GCCATTTAGT GGTCCCGTCA
  GGTAACAGCT GTGACAGAAG AAAACATACT AGTACTGTTC TTACTCATCT ATCTAGAAAA
  GTCTTATTCC TCGTGATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38245989	NES09539038	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094265					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245989	NES09539038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97894999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595673	regulatory region 595673			1968 bp distal
Rr595675	regulatory region 595675			1960 bp proximal