rs28094249 SNP Detail

Summary

• ID
  rs28094249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97899571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACCCTAC ATATTGCATG
  GGCTGCATGC ACAACAGTAA TGGACACATG TGCATGCAAA GAGCTCATAA GGTAGACACA
  GTTTGCGTCT CGACATTGTT AGGATTAATG AGCCGAGGTT GGGAAGCTCA CTCTCGTTTC
  TGATTCAAGG ATGTTTTAAA ATATGAGATA CACATGCTTG CTAACCTCTG AAACCACTCA
  M
  CATGAGTCCA TTGAGCACTC TGGACCAGGC CATCTGGTGC CTTTGCTGCA TCCCACATGA
  CTGCAAACTA CATGATCATT GGAGGTCAAT GCAGGGCAGG TTAAGGAACA TGCGTGTGGG
  CTGAGTTAAT TTTTAAAATC CATATAGAGG TAGAGCACTG TATTTACATA TACATGTTCC
  TTCCCTCATA TATTCTGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38245973	NES09538799	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28094249					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38245973	NES09538799	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97899571 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595675	regulatory region 595675			1673 bp distal