rs28093088 SNP Detail

Summary

• ID
  rs28093088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88767607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAGTGT TTGTGTGAAT
  GTGTAATTCT GTGTGATTGT ATGTGTGTGT GAATGAGAGA GAGAGAGAAA GAGAGGGGGA
  AGAGAGAAAG AGTGAGAAAG GGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAATG CACAAACCTG TAATGTTGTG AATGTTGTGA TCACGGCTCT TGTACATGCA
  Y
  TGGTTCTCTA ATGCAACTGT GGGTTCACAC TCAGCTCATT GAGTTTAATA GCAAGCTTTG
  TGCACCCTGC ATCCTCCTGA TGGCACTAAA ATTATCAGAT AAATAACTAA TGTACAGTGA
  TTATTAAATC AAGCTTCATA TAAATTTATG TTACTTTTAA TGAAGGTAAC TCAAAAAACC
  AATTTTAGGA CTTTAAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38237711	NES09568226	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28093088					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237711	NES09568226	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88767607 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	1247 bp proximal
Ifna1	interferon alpha 1	717 bp upstream
Rr595123	regulatory region 595123	1833 bp proximal