rs28093082 SNP Detail

Summary

• ID
  rs28093082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTAAAT TTCAAGTAAG
  GACAGTTTAT CAGTACTGTA ACAGTTAATG AAAATTCAAA TTAGGAAAAG AAATGTAAGA
  AAGCTTTTGA TGAGGACCAG TGAAAGAGGA AGCAATAATG AAAACCACAA TGGTTTAGAA
  AACACCCAGA CGCAAGCAGA GAATGAGTTA AAGAAAGTGA AAAGACAAGT GGAAAGTGAT
  R
  GAAGGGCATT CAGAAAGTAA AAACCAGTGT TTGCCCTATT TAAGACACAT TCACCCAGGA
  TGGTCTTCAG AGAACCTAGA GGGGAAGGAT CAGGACCAAA CAGTCCAGAA GACCAGAAGC
  TTTGGCAACA CTCACCATGG CTAGGCTCTG TGCTTTCCTG ATGGTCCTGG CGGTGCTGAG
  CTACTGGCCA ACCTGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38237705	NES09568232	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28093082					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237705	NES09568232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768187 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	667 bp proximal
Ifna1	interferon alpha 1	137 bp upstream
Rr595123	regulatory region 595123	1253 bp proximal