rs28093079 SNP Detail

Summary

• ID
  rs28093079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAAGCA ATAATGAAAA
  CCACAATGGT TTAGAAAACA CCCAGACGCA AGCAGAGAAT GAGTTAAAGA AAGTGAAAAG
  ACAAGTGGAA AGTGATGGAA GGGCATTCAG AAAGTAAAAA CCAGTGTTTG CCCTATTTAA
  GACACATTCA CCCAGGATGG TCTTCAGAGA ACCTAGAGGG GAAGGATCAG GACCAAACAG
  Y
  CCAGAAGACC AGAAGCTTTG GCAACACTCA CCATGGCTAG GCTCTGTGCT TTCCTGATGG
  TCCTGGCGGT GCTGAGCTAC TGGCCAACCT GCTCTCTAGG ATGTGACCTT CCTCAGACTC
  ATAACCTCAG GAACAAGAGA GCCTTGACAC TCCTGGTACA AATGAGGAGA CTCTCCCCTC
  TCTCCTGCCT GAAGGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38237702	NES09568235	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28093079					SNP	C	C	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237702	NES09568235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768291 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	563 bp proximal
Ifna1	interferon alpha 1	33 bp upstream
Rr595123	regulatory region 595123	1149 bp proximal