rs28093075 SNP Detail

Summary

• ID
  rs28093075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCAGGACC AAACAGTCCA GAAGACCAGA AGCTTTGGCA
  ACACTCACCA TGGCTAGGCT CTGTGCTTTC CTGATGGTCC TGGCGGTGCT GAGCTACTGG
  Y
  CAACCTGCTC TCTAGGATGT GACCTTCCTC AGACTCATAA CCTCAGGAAC AAGAGAGCCT
  TGACACTCCT GGTACAAATG AGGAGACTCT CCCCTCTCTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38237698	NES09568239	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28093075					SNP	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237698	NES09568239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768375 () rs orientation: forward

Symbol	Name	Function Class
Ifna1	interferon alpha 1	Coding-NonSynonymous
Rr595123	regulatory region 595123	1065 bp proximal