rs28093071 SNP Detail

Summary

• ID
  rs28093071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTGAGCT GACCCAGCAG ATCCTGAACA TCTTCACATC
  AAAGGACTCA TCTGCTGCAT GGAATACAAC CCTCCTAGAC TCATTCTGCA ATGACCTCCA
  Y
  CAGCAGCTCA ATGACCTGCA AGGCTGTCTG ATGCAGCAGG TGGGGGTGCA GGAATTTCCC
  CTGACCCAGG AAGATGCCCT GCTGGCTGTG AGGAAATACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38237694	NES09568243	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28093071					SNP	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38237694	NES09568243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768662 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	192 bp proximal
Ifna1	interferon alpha 1	Coding-Synonymous
Rr595123	regulatory region 595123	778 bp proximal