rs28091966 SNP Detail

Summary

• ID
  rs28091966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:99034646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCTTAG AGTTTTAATA
  GTGTCATTAC AAAGCAATTA CACTAAGCAC CTACCTGTGT GTAACCTTGA GATAGATACT
  TTCGTCTGCC ATGTTCTCCT GCTATGATTT CAAGAGAAGA CATTTATTGT GATAGATTGG
  GAATCATGAG TGCTCTGGTG AGCTCAGTGC TAATGAAATC TCCAAAGGTT TTCTCTCTTA
  Y
  TCAGCACTAC TCCTAAGCTT TGAATCTGAC AATAGCTATT TGTTAGGCAA AGCGATCAAT
  TAATATAGTC TCTCTCAATC CCATATGTAT TTAAGTGGCC ATATCTAAAT ATTTGCAATA
  TACTTTTCAA GTGCAAGAAT TTCAGTTGTG TGTGGAATAG AAAAAAATTC AAGGAAAAAT
  GCAGTGAAAA AAGTATGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38240803	NES09552722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28091966					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240803	NES09552722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99034646 () rs orientation: forward

Symbol	Name	Function Class
Gm12681	predicted gene 12681	505 bp downstream
Rr595831	regulatory region 595831	474 bp proximal
Rr595832	regulatory region 595832	1825 bp proximal